PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G243100.2
Common NameB456_004G243100, LOC105792544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 307aa    MW: 34599.9 Da    PI: 9.5675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G243100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13122173155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.004G243100.2 122 QRMTHIAVERNRRKQMNDYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 173
                         79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.44E-12120177No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.364121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-17121191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-11122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALEAVIFQQ DLLGYNSNWS HDFGLGKPES KDSFGCFPDN QTPEINHFVH GDYWVSTTPT  60
SSMAAPVPYH HQLQHHCPNS SSDAANVNGL SSSGDPFDAS TTPRPKRRRF KARKNKQEIE  120
NQRMTHIAVE RNRRKQMNDY LSVLRSLMPE SYVQRGDQAS IIGGAINFVK ELEHRLQCLS  180
AEKEVKERSN LTNGGRRSCS SVFDEFFTFP QYSASSKQGD RKDSISMNDQ STVETQSAIA  240
DIEVTMVERH VNLRIRSKKR PAQLLKVVSG LNCMRLSILH LNVTTLDQTV LYSLSVKVQN  300
AGRRRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122133RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476618.10.0PREDICTED: transcription factor bHLH94-like isoform X2
SwissprotQ9C7T48e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D2S5B90.0A0A0D2S5B9_G
STRINGPOPTR_0013s02680.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-64bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]